SQLAlchemy models for the UKRDC
Project description
UKRDC-SQLA
SQLAlchemy models for the UKRDC and related databases.
Installation
pip install ukrdc-sqla
Example Usage
from datetime import datetime
from ukrdc_sqla.ukrdc import LabOrder, PatientNumber, PatientRecord, ResultItem
def commit_extra_resultitem(session):
patient_record = PatientRecord(
pid="PYTEST01:LABORDERS:00000000L",
sendingfacility="PATIENT_RECORD_SENDING_FACILITY_1",
sendingextract="PV",
localpatientid="00000000L",
ukrdcid="000000001",
repository_update_date=datetime(2020, 3, 16),
repository_creation_date=datetime(2020, 3, 16),
)
patient_number = PatientNumber(
id=2,
pid="PYTEST01:LABORDERS:00000000L",
patientid="111111111",
organization="NHS",
numbertype="NI",
)
laborder = LabOrder(
id="LABORDER_TEST2_1",
pid="PYTEST01:LABORDERS:00000000L",
external_id="EXTERNAL_ID_TEST2_1",
order_category="ORDER_CATEGORY_TEST2_1",
specimen_collected_time=datetime(2020, 3, 16),
)
resultitem = ResultItem(
id="RESULTITEM_TEST2_1",
order_id="LABORDER_TEST2_1",
service_id_std="SERVICE_ID_STD_TEST2_1",
service_id="SERVICE_ID_TEST2_1",
service_id_description="SERVICE_ID_DESCRIPTION_TEST2_1",
value="VALUE_TEST2_1",
value_units="VALUE_UNITS_TEST2_1",
observation_time=datetime(2020, 3, 16),
)
session.add(patient_record)
session.add(patient_number)
session.add(laborder)
session.add(resultitem)
session.commit()
Developer notes
Publish updates
- Iterate the version number (
poetry version major/minor/patch) - Push to GitHub repo
- Create a GitHub release
- GitHub Actions will automatically publish the release to PyPI
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