vipersci 0.9.2

get_position.py - Now has support for http basic auth and can now handle returns from the REST service that could be either a sequence of elements or a single element.

create_raw.py - Updated to accommodate the icer_minloss and icer_byte_quota properties of an ImageRecord.

image_records.py - Added properties for the new image_nickname and waypoint_id properties, and updated the concept of capture_id to be a combination of the waypoint_id and the locally unique_capture_id, instead of a combination of the locally unique_capture_id and the image_request_id.

pano_check.py - removed a redundant argument.

create_mmgis_pano.py - outpaths for saving the pano and thumbnail were being incorrectly generated.

The light_records.py table now just records state changes (from ‘on’ to ‘off’ or vice-versa).

create_image.py’s create() method now has an imgtype argument that default to TIFF (but can be PNG).

junc_image_req_ldst.py got some additional columns to manage the Science Team evaluation of images acquired from Image Requests.

create_pano.py’s make_pano_product() function renamed to make_pano_record().

nss_simulator.py - nodata defaults for ideal detector count maps updated to more realistic values for dry terrain.

image_statistics.py - Added additional stats in the compute() function, and added a pprint() function to format the info nicely.

pds.Purpose now provides names and explanations for the PDS-allowable values for “purpose.”

yamcs_reception_time column added to the image_records.py table.

Association table junc_image_pano created which provides a many-to-many connection between ImageRecords and PanoRecords and added bidirectional relationship entries to each table.

pano_records table now has pan and tilt angle min/max values to indicate angular range of panorama coverage.

ImageRecord objects will now extract an ImageRequest ID from the provided capture_id if it is larger than the 16 bit range.

image_requests.py - “Acquired,” “Not Acquired,” “Not Planned,” and “Not Obtainable” statuses added to enum. Also added asdict() method.

ptu_records.py - Tables to record the pan and tilt of the rover’s pan-tilt-unit (PTU).

create_browse.py - For making browse products from existing image products.

create_mmgis_pano.py - For making pano products for use in MMGIS.

create_pano.py - updated to correctly add PanoRecord associations, can now query database for ImageRecords.

create_pano_product.py - takes PanoRecords and makes a PDS Pano Product.

get_position.py - Gets position and yaw from a REST-based service.

create_vis_dbs.py - Now also supports spatialite databases, primarily for testing.

create_raw.py - Added components for adding observational intent and data quality to the XML label.

labelmaker - A program to help build PDS4 bundle and collection labels.

bundle_install - A program to copy just the files related to a PDS4 bundle into a new location. Fundamentally allowing a “make install” for PDS4 bundles.

ldst_verification.py because the evaluation activity reflected here was on a per-image basis, but it has been revised to be on a per-Image-Request basis.

image_records.py (this replaces the concept of raw_products.py)

create_image.py (this replaces most of the functionality of the previous create_raw.py)

image_tags.py which contains image tag information.

image_requests.py defines the table for holding image requests.

Junction tables to connect LDST information to ImageRequests and ImageTags to ImageRecords.

ldst.py table which contains LDST information.

light_records.py which handles information about luminaire state.

anaglyph.py

pano_check.py to sort through image records and figure out what would be a good panorama set.

header.pga_gain_dict structure now has values that are always floats, which helps to determine whether this transformation needs to be applied.

image_stats.py is the new raw_stats.py, supporting ImageRecord objects.

pano_products.py is now pano_records.py, supporting ImageRecord objects.

create_pano.py now supports ImageRecords and PanoRecords.

create_raw.py rearchitected to gather information from “records” to build XML PDS labels.

create_vis_dbs entry point changed to vis_create_dbs to conform with other vis-related entry points.

pid.VISID now properly sorts the uncompressed “z” state lower (better) than the lossless compressed “a” state.

pid.VISID now has a best_compression() function to sort out the best compression state from an iterable containing may compression states from a single observation.

PanoID class added to pds.pid

pano_products and create_pano added, still very preliminary, mostly just mock-ups.

colorforge program for managing colormaps.

mypy is now in the development dependencies to support type checking.

lint/mypy target added to Makefile.

tri2gpkg now has a –remove_facets option to remove facets with a particular value.

Explicit in documentation about developing in Python 3.8 (although earlier versions should still be supported).

Many changes to improve type checking.

Added numeric instrument aliases and checking for them.

Added information for procesingInfo and outputMask from Yamcs.

Upgrade to SQLAlchemy >=2.

Moved definition of Base class up to vis.db.

heatmaps.py will now accept value data lists or arrays with np.nan or None values which will be appropriate ignored in the density heatmap calculation.

tri2gpkg - if the provided polygons have zero area, issue an error rather than making a confusing GeoPackage file.

carto.bounds module added to unify functionality for both heatmaps and dotmaps.

carto.dotmap module for creating simple heatmap-like visualizations from 2d scalar data.

Makefile now has a “lint/twine” option to hopefully help me remember to test that.

VIS image_statistics.py and raw_stats.py modules.

A variety of unit tests.

mypy configuration arguments.

Updated templates and modules for PDS information model 21.

Flattened test directory structure.

tri2gpkg -v is no longer an alias for –value-names, as it now determines verbosity since logging has been added.

GitHub workflows have been re-arranged. Black and flake8 are now run under the “Lint” action, and the flake8 tests are removed from the Python testing matrix.

The pinned versions requirements_dev.txt

CHANGELOG.rst had an unescaped underbar which caused trouble with twine upload.

setup.cfg arrangement in install_requires passed local testing, but not GitHub testing, have now fixed.

heatmap’s generate_density_heatmap() function now properly returns values of zero in the returned out_count numpy array when there are no counts in those grid cells instead of the provided nodata value.

raw-template.xml can only have one Image_Filter object.

tri2gpkg now works correctly if –keep_z is specified

tri2gpkg now uses the correct srs if a pre-defined site is selected.

pds.datetime.fromisozformat() function.

pds.pid.VISID.compression_class() function.

pds.xml.py added, very minimal, functionality may be moved.

vis.db.raw_products.RawProduct.from_xml() function.

vis.db.raw_products.RawProduct.asdict() function.

vis.pds.create_raw.check_bit_depth() function.

vis.db.create_vis_dbs convenience program to add empty tables to database.

Updated templates and modules for PDS information model 18.

vis.db.raw_products.RawProduct has some improved error-checking in __init__() and validate_datetime_asutc().

vis.db.raw_products.RawProduct product_id column is now unique in database.

vis.db.raw_products.RawProduct md5_checksum changed to file_md4_checksum to clearly associate it with the other properties that begin with “file_”.

vis.pds.create_raw.tiff_info() no longer raises an error if a bit depth other than 16 is provided.

vis.pds.create_raw now creates .JSON output files by default instead of XML PDS4 labels, but XML files can still be made.

carto.heatmap.write_geotiff_rasterio now supports compressed output and defaults to “deflate”

carto.tri2gpkg.replace_with() now correctly returns a float value in all circumstances.

pds.pid.VIPERID.datetime() now properly returns datetimes with a UTC timezone.

vis.db.raw_products.RawProduct.label_dict() now correctly sets sample_bits and sample_bit_mask if the image is a SLoG image.

Added __init__.py files to all modules (some modules did not get incorporated into the PyPI package because they did not have __init__.py files.

The setup.cfg now properly includes requirements that vipersci needs.

Many modules still had if __name__ == “__main__” constructs from early development which are now not needed with the entry points in setup.cfg.

Data Simulators for NSS, NIRVSS, and MSolo

Lots of material to enaable PDS archiving of VIS data.

Added GitHub workflow to perform Black format checking

Many updates to heatmap.py

Applied Black formatting to all code in the repo.

Modified Python testing workflow to actually work.