xefab 0.1.13

Installation

To install xefab, its recomended to use pipx:

$ pipx install xefab

Alternatively you can install it using pip:

$ pip install xefab

Usage

You can list the available tasks and options by running xf/xefab without any options.

$ xf
Usage: xf [--core-opts] [<host>] [<subcommand>] task1 [--task1-opts] ... taskN [--taskN-opts]

Core options:

--complete                      Print tab-completion candidates for given parse remainder.
--hide=STRING                   Set default value of run()'s 'hide' kwarg.
--print-completion-script=STRINGPrint the tab-completion script for your preferred shell (bash|zsh|fish).
--prompt-for-login-password     Request an upfront SSH-auth password prompt.
--prompt-for-passphrase         Request an upfront SSH key passphrase prompt.
--prompt-for-sudo-password      Prompt user at start of session for the sudo.password config value.
--write-pyc                     Enable creation of .pyc files.
-d, --debug                     Enable debug output.
-D INT, --list-depth=INT        When listing tasks, only show the first INT levels.
-e, --echo                      Echo executed commands before running.
-f STRING, --config=STRING      Runtime configuration file to use.
-F STRING, --list-format=STRING Change the display format used when listing tasks. Should be one of: flat (default), nested,
                                json.
-h [STRING], --help[=STRING]    Show core or per-task help and exit.
-H STRING, --hosts=STRING       Comma-separated host name(s) to execute tasks against.
-i, --identity                  Path to runtime SSH identity (key) file. May be given multiple times.
-l [STRING], --list[=STRING]    List available tasks, optionally limited to a namespace.
-p, --pty                       Use a pty when executing shell commands.
-R, --dry                       Echo commands instead of running.
-S STRING, --ssh-config=STRING  Path to runtime SSH config file.
-t INT, --connect-timeout=INT   Specifies default connection timeout, in seconds.
-T INT, --command-timeout=INT   Specify a global command execution timeout, in seconds.
-V, --version                   Show version and exit.
-w, --warn-only                 Warn, instead of failing, when shell commands fail.


Subcommands:

show-context                      Show the context being used for tasks.
admin.user-db
dali.download-file                Download a file from a remote server.
dali.sbatch                       Create and submit a job to SLURM job queue on the remote host.
dali.show-context                 Show the context being used for tasks.
dali.squeue (dali.job-queue)      Get the job-queue status.
dali.start-jupyter                Start a jupyter analysis notebook on the remote host and forward to local port via ssh-tunnel.
dali.upload-file                  Upload a file to a remote server.
github.clone
github.is-private
github.is-public
github.token
github.xenon1t-members
github.xenonnt-keys
github.xenonnt-members
install.chezmoi
install.get-system
install.github-cli (install.gh)
install.gnupg (install.gpg)
install.go
install.gopass
install.miniconda (install.conda)
install.which
midway.download-file              Download a file from a remote server.
midway.sbatch                     Create and submit a job to SLURM job queue on the remote host.
midway.show-context               Show the context being used for tasks.
midway.squeue (midway.job-queue)  Get the job-queue status.
midway.start-jupyter              Start a jupyter analysis notebook on the remote host and forward to local port via ssh-tunnel.
midway.upload-file                Upload a file to a remote server.
midway3.download-file             Download a file from a remote server.
midway3.sbatch                    Create and submit a job to SLURM job queue on the remote host.
midway3.show-context              Show the context being used for tasks.
midway3.squeue (midway3.job-queue)Get the job-queue status.
midway3.start-jupyter             Start a jupyter analysis notebook on the remote host and forward to local port via ssh-tunnel.
midway3.upload-file               Upload a file to a remote server.
osg.condorq (osg.job-queue)
osg.mc-chain                      Run a full chain MC simulation
secrets.setup
secrets.setup-utilix-config
sh.exists
sh.get-system
sh.is-dir
sh.is-file
sh.path
sh.shell (sh)                     Open interactive shell on remote host.
sh.which

You can get help for a specific task by running e.g.

$ xf --help midway3.start-jupyter
╭─ start-jupyter ───────────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│ xf [--core-opts] start-jupyter [--options][other tasks here ...]                                                              │
│                                                                                                                               │
│ Start a jupyter analysis notebook on the remote host and forward to local port via ssh-tunnel.                                │
│                                                                                                                               │
│ Options:                                                                                                                      │
│ --image-dir=STRING                              Directory to look for singularity images                                      │
│ --remote-port=STRING                            Port to use for jupyter server to on the worker node                          │
│ --=INT, --local-port=INT                        Local port to attempt to forward to (if free)                                 │
│ -a INT, --max-hours=INT                         Maximum number of hours to run for                                            │
│ -b, --bypass-reservation                        Dont attempt to use the xenon notebook reservation                            │
│ -c INT, --cpu=INT                               Number of CPUs to request                                                     │
│ -d, --detached                                  Run the job and exit, dont perform cleanup tasks.                             │
│ -e STRING, --env=STRING                         Environment to run on                                                         │
│ -f, --force-new                                 Force a new job to be started                                                 │
│ -g, --gpu                                       Use a GPU                                                                     │
│ -i STRING, --binds=STRING                       Directories to bind to the container                                          │
│ -j STRING, --jupyter=STRING                     Type of jupyter server to start (lab or notebook)                             │
│ -l, --local-cutax                               Use user installed cutax (from ~/.local)                                      │
│ -m INT, --timeout=INT                           Timeout for the job to start                                                  │
│ -n STRING, --node=STRING                        Node to run on                                                                │
│ -o STRING, --notebook-dir=STRING                Directory to start the notebook in                                            │
│ -p STRING, --partition=STRING                   Partition to run on (xenon1t or dali)                                         │
│ -r INT, --ram=INT                               Amount of RAM to allocate (in MB)                                             │
│ -t STRING, --tag=STRING                         Tag of the container to use                                                   │
│ -u, --debug                                     Print debug information                                                       │
│ -w, --no-browser                                Dont open the browser automatically when done                                 │
╰───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯

Some tasks are registered to run on a specific host. When you run them, the –hosts option will be ignored.

e.g. if you run

$ xf midway3 start-jupyter

The task will be run on the midway3 host, not the host you specified with –hosts.

Features

• TODO

Credits

This package was created with Cookiecutter and the briggySmalls/cookiecutter-pypackage project template.