Excel report from viral sequencing analysis output
Project description
xlavir
Excel report from viral sequencing data analysis output from the nf-core/viralrecon or peterk87/nf-virontus Nextflow pipelines.
Free software: MIT license
Documentation: https://xlavir.readthedocs.io.
Features
- Collect sample results from a nf-core/viralrecon or peterk87/nf-virontus into a Excel report
QA/QC of sample analysis results (basic PASS/FAIL based on minimum genome coverage and depth)
Nextflow workflow execution information
Prepend worksheets from other Excel documents into the report (e.g. cover page/sheet, sample sheet, lab results)
Add custom images into worksheets with custom names and descriptions (e.g. phylogenetic tree figure PNG)
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2021-02-16)
First release on PyPI.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for xlavir-0.1.1-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 35e6fe2f3324acab3db8c87feb9ed84b752229e047e706c9a1c94b0c7fd40541 |
|
MD5 | 6d092d0ab4a814411633c8527c42d3d4 |
|
BLAKE2b-256 | 5de179376c6179b244e9ddaa811a73ce91eb43e06c6139661e903ad83a2aac3f |