A toolkit for extracting chemical information from the scientific literature.

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  • License: MIT License (MIT)
  • Author: Matt Swain
  • Tags text-mining, mining, chemistry, cheminformatics, nlp, html, xml, science, scientific
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Project description

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ChemDataExtractor is a toolkit for extracting chemical information from the scientific literature.

Features

  • HTML, XML and PDF document readers

  • Chemistry-aware natural language processing pipeline

  • Chemical named entity recognition

  • Rule-based parsing grammars for property and spectra extraction

  • Table parser for extracting tabulated data

  • Document processing to resolve data interdependencies

Installation

To install ChemDataExtractor, simply run:

pip install chemdataextractor

Or if you are an Anaconda user, run:

conda install -c chemdataextractor chemdataextractor

Alternatively, try one of the other installation options.

Documentation

Full documentation is available at http://chemdataextractor.org/docs

License

ChemDataExtractor is licensed under the MIT license, a permissive, business-friendly license for open source software.

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