Functions to manipulate networks and data related to signalling pathways.
Project description
The package cellnopt.core provides tools to manipulate networks and data related to signalling pathways. It provides I/O functions for SIF, MIDAS, SOP formats and a convenient graph data structure called CNOGraph.
Here is a simple example that creates a graph and plots it using dot/graphviz:
from cellnopt.core import *
c = CNOGraph()
c.add_reaction("A=B")
c.add_reaction("A+B=C")
c.plotdot()
For a full documentation, see the sphinx documentation in the ./doc directory.
Installation note
cellnopt.core has a dependencies on pandas, which requires cython. So, you must install cython first.
All other dependencies should be installed automatically (networkx, numpy, matplotlib)
pip install cython pip install cellnopt.core
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Source Distribution
cellnopt.core-0.5.0.tar.gz
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