dnds 2.1
pip install dnds
Latest version
Released:
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
Navigation
Unverified details
These details have not been verified by PyPIProject links
Meta
- License: MIT License (MIT)
- Author: Adel Qalieh
Classifiers
- Development Status
- Intended Audience
- License
- Natural Language
- Operating System
- Programming Language
- Topic
Project description
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method. Also calculates the pN/pS ratio precisely (previously referred to as dN/dS).
Usage
>>> sequence_1 = "ATGCTTTTGAAATCG"
>>> sequence_2 = "ATGCGTTCGAAGTCG"
>>> pnps(sequence_1, sequence2)
Fraction(38, 71)
>>> round(float(pnps(sequence_1, sequence2)), 3)
0.535
>>> round(dnds(sequence_1, sequence_2), 3)
0.467Project details
Unverified details
These details have not been verified by PyPIProject links
Meta
- License: MIT License (MIT)
- Author: Adel Qalieh
Classifiers
- Development Status
- Intended Audience
- License
- Natural Language
- Operating System
- Programming Language
- Topic
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
No source distribution files available for this release.See tutorial on generating distribution archives.
Built Distribution
File details
Details for the file dnds-2.1-py2.py3-none-any.whl.
File metadata
- Download URL: dnds-2.1-py2.py3-none-any.whl
- Upload date:
- Size: 3.7 kB
- Tags: Python 2, Python 3
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 31b24e1715d2f2ab05499772cb98c9e93af34c0744cd8c4d3836d264ac3a3617 |
|
| MD5 | 01f80aa5e27e90b1417dfc1bda21e5aa |
|
| BLAKE2b-256 | b5c8c538ab1fd1629b4f0692071d0a175cb191cffbc6a7c5c6636b604de80003 |
