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Project description
PyFBU
Implementation of the Fully Bayesian Unfolding algorithm described in physics.data-an/1201.4612. The software is based on the Bayesian statistical modeling package PyMC3.
Dependencies
PyFBU is tested on Python 3.6.3 within Anaconda 4.3.30 and depends on PyMC 3.
Installation
The use of an isolated Python environment is recommended:
conda create --name fbuenv source activate fbuenv
PyMC 3 can be installed using conda
conda install -c conda-forge pymc3
The following packages also need to be installed
conda install mkl conda install numpy conda install mkl-service
And this export needs to be added to your bashrc or similar to avoid warings
export MKL_THREADING_LAYER=GNU
or pip
pip install git+https://github.com/pymc-devs/pymc3
The latest stable version of PyFBU can be installed using pip.
pip install fbu
Alternatively one can check out the development version of the code from the GitHub repository:
git clone https://github.com/pyFBU/fbu.git
Usage
A simple tutorial to help you get started.
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