A morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

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Project description

ITKMorphologicalContourInterpolation

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Overview

An ITK-based implementation of morphological contour interpolation based off the paper:

Albu AB1, Beugeling T, Laurendeau D. "A morphology-based approach for interslice interpolation of anatomical slices from volumetric images." IEEE Trans Biomed Eng. 2008 Aug;55(8):2022-38. doi: 10.1109/TBME.2008.921158.

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Documentation can be found in the Insight Journal article:

Zukić D., Vicory J., McCormick M., Wisse L., Gerig G., Yushkevich P., Aylward S. "ND Morphological Contour Interpolation", The Insight Journal. January-December, 2016. https://hdl.handle.net/10380/3563 https://insight-journal.org/browse/publication/977

Installation

Python

To install the wasm Python packages:

pip install itkwasm-morphological-contour-interpolation

To install the native Python packages:

python -m pip install --upgrade pip
python -m pip install itk-morphologicalcontourinterpolation

JavaScript

Install the JavaScript/TypeScript package:

npm install @itk-wasm/morphological-contour-interpolation

C++

Since ITK 4.11.0, this module is available in the ITK source tree as a remote module. To enable it, set:

Module_MorphologicalContourInterpolation:BOOL=ON

in ITK's CMake build configuration.

License

This software is distributed under the Apache 2.0 license. Please see the LICENSE file for details.

Acknowledgements

This work is supported by NIH grant R01 EB014346, "Continued development and maintenance of the ITK-SNAP 3D image segmentation software."

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