Visualize (multiple) sequence alignment (MSA) with colored boxes
Project description
SeqPlot
=======
Plot overview of Multiple Sequence Alignments (MSA) using colored boxes
######################################
# seqPlot.py
######################################
usage:
seqPlot.py -f multifasta alignment
options:
-f, --fasta=FILE multifasta alignment (eg. "align.fas")
[ -o, --outfile=STR output file (png) ]
[ -c, --colorscheme=STR STR in ("default", "clustal", "lesk",
"cinema", "maeditor", "dna",
"aacid") ]
[ -x, --boxwidth=INT draw INT pixels per residue (x direction) ]
[ -y, --boxheight=INT draw INT pixels per residue (y direction) ]
adding identifiers:
[ -s, --show_names also draw sequence ids ]
[ -F, --font_file=FONT path to truetype font (monospace fonts recommended) ]
=======
Plot overview of Multiple Sequence Alignments (MSA) using colored boxes
######################################
# seqPlot.py
######################################
usage:
seqPlot.py -f multifasta alignment
options:
-f, --fasta=FILE multifasta alignment (eg. "align.fas")
[ -o, --outfile=STR output file (png) ]
[ -c, --colorscheme=STR STR in ("default", "clustal", "lesk",
"cinema", "maeditor", "dna",
"aacid") ]
[ -x, --boxwidth=INT draw INT pixels per residue (x direction) ]
[ -y, --boxheight=INT draw INT pixels per residue (y direction) ]
adding identifiers:
[ -s, --show_names also draw sequence ids ]
[ -F, --font_file=FONT path to truetype font (monospace fonts recommended) ]
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