BarcelonaBeta + XNAT = bx

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Author: Greg Operto

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Project description

bx

pipeline status coverage report downloads python versions pypi version

BarcelonaBeta + XNAT = BX

Usage

bx <command> <subcommand> <resource_id> --config /path/to/.xnat.cfg --dest /tmp [--overwrite]

Examples:

bx nifti <resource_id>
  • Download a NIfTI from a given sequence from an experiment/entire project.
bx spm12 volumes <resource_id>
  • Download a table with grey/white matter and CSF volumes estimated from SPM12 segmentations
bx spm12 files <resource_id>
  • Download SPM12 segmentations from an experiment/entire project
bx spm12 report <resource_id>
  • Download a quality report from an SPM12 segmentation for an experiment/entire project
bx spm12 tests <resource_id>
  • Download a table with results from automatic validation tests from an SPM12 segmentation for an experiment/entire project
bx freesurfer6 aseg <resource_id>
  • Download a table with FreeSurfer aseg results for an experiment/entire project
bx freesurfer6 aparc <resource_id>
  • Download a table with FreeSurfer aparc results for an experiment/entire project
bx freesurfer6 hippoSfVolumes <resource_id>
  • Download a table with FreeSurfer hippoSfVolumes results for an experiment/entire project
bx freesurfer6 files <resource_id>
  • Download FreeSurfer6 segmentations from an experiment/entire project
bx mrdates <resource_id>
  • Download a table with acquisition dates from an experiment/entire project

Dependencies

Requires the bbrc branch of pyxnat.

Install

pip install bbrc-bx

Development

Please contact us for details on how to contribute.

BarcelonaBeta

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for jhuguetn from gravatar.com jhuguetn Avatar for xgrg from gravatar.com xgrg

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These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

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Author: Greg Operto

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Release history Release notifications | RSS feed

0.5.3

0.5.2

0.5.1

0.5

0.4.2

0.4.1

0.4

0.3.2

0.3.1

0.3.post1

0.2.post6

0.1.9

0.1.8

0.1.7

0.1.6

0.1.5.post1

0.1.5.post0

0.1.5

0.1.4.6.post2

0.1.4.6.post1

0.1.4.6.post0

0.1.4.6

0.1.4.5

0.1.4.3

0.1.4.2

0.1.4.1

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0.2.post1

0.1.0.2

0.1.0.1

0.1.0

0.0.9.6

0.0.9.5

This version

0.0.9.4

0.0.9.3

0.0.9.3b0 pre-release

0.0.9.2

0.0.9.2b0 pre-release

0.0.9.1

0.0.8.1

0.0.8

0.0.7.1

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3.9

0.0.3.8

0.0.3.7

0.0.3.6

0.0.3.5

0.0.3.4

0.0.3.3

0.0.3.2

0.0.3.1

0.0.3

0.0.2

0.0.1

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Source Distribution

bbrc-bx-0.0.9.4.tar.gz (10.4 kB view hashes)

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