Framework for differential microbiome abundance using Bayesian inference
Project description
BIRDMAn
Bayesian Inferential Regression for Differential Microbiome Analysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.
See the documentation for details on usage.
Installation
Currently BIRDMAn requires Python 3.7 or higher.
conda install -c conda-forge biom-format patsy xarray
pip install cmdstanpy
pip install git+git://github.com/arviz-devs/arviz.git
pip install birdman
You have to install cmdstan
through the cmdstanpy.install_cmdstan
function first. See the CmdStanPy documentation for details.
Project details
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