Scoring functions for the dream / sage challenges
Project description
Overview
dreamtools aims at sharing code related to DREAM challenges.
This repository is meant to contain (small) data sets and codes related to the scoring of the DREAM challenges.
It was created at the time of DREAM8-9 and contains only Dream8 HPN challenge code for now. Note however that dreamtools contains information about DREAM6-7 (parameter estimation). More code/scripts about other challenges will be added later.
The main goals are:
provide user a scoring function for the challenges
provide developer a place to share-reuse code used before/during/after the challenges
dreamtools-scoring executable
For users, dreamtools provide one executable called dreamtools-scoring, which should be installed automatically when installing dreamtools. Knowing the name of the challenge (and possibly sub-challenge), it works as follows:
dreamtools-scoring --challenge d8c1 --sub-challenge sc1a --submission ~/alphabeta-Network.zip
It prints some information and the score of the submision for instance for the example above:
Solution for alphabeta-Network.zip in challenge d8c1 (sub-challenge sc1a) is : AUROC: 0.781937275711
Scoring functions available so far:
Dream8 HPN (D8C1) sub challenges named sc1a, sc1b, sc2a, sc2b. See Synapse page for details
Installation
pip install dreamtools
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