Scoring functions for the dream / sage challenges
Project description
DreamTools
==========
Overview
---------
**dreamtools** aims at sharing code related to `DREAM <http://dreamchallenges.org>`_ challenges.
This repository is meant to contain (small) data sets and codes related to the scoring of the
`DREAM challenges <http://dreamchallenges.org>`_.
The main goals are:
#. provide user a scoring function for the challenges
#. provide developer a place to share-reuse code used before/during/after the challenges
dreamtools-scoring executable
-------------------------------
For users, **dreamtools** provide one executable called **dreamtools-scoring**, which should be installed automatically
when installing dreamtools. Knowing the name of the challenge (and possibly sub-challenge), it works as follows::
dreamtools-scoring --challenge d8c1 --sub-challenge sc1a --submission ~/alphabeta-Network.zip
It prints some information and the score of the submision for instance for the example above::
Solution for alphabeta-Network.zip in challenge d8c1 (sub-challenge sc1a) is :
AUROC: 0.781937275711
Scoring functions available so far:
* Dream8 HPN (D8C1) sub challenges named sc1a, sc1b, sc2a, sc2b.
See `Synapse page <https://www.synapse.org/#!Synapse:syn1720047>`_ for details
* Dream8 Tox (D8C2) sub challenges named sc1, sc2.
See `Synapse page <https://www.synapse.org/#!Synapse:syn1761567>`_ for details
Installation
---------------
::
pip install dreamtools
==========
Overview
---------
**dreamtools** aims at sharing code related to `DREAM <http://dreamchallenges.org>`_ challenges.
This repository is meant to contain (small) data sets and codes related to the scoring of the
`DREAM challenges <http://dreamchallenges.org>`_.
The main goals are:
#. provide user a scoring function for the challenges
#. provide developer a place to share-reuse code used before/during/after the challenges
dreamtools-scoring executable
-------------------------------
For users, **dreamtools** provide one executable called **dreamtools-scoring**, which should be installed automatically
when installing dreamtools. Knowing the name of the challenge (and possibly sub-challenge), it works as follows::
dreamtools-scoring --challenge d8c1 --sub-challenge sc1a --submission ~/alphabeta-Network.zip
It prints some information and the score of the submision for instance for the example above::
Solution for alphabeta-Network.zip in challenge d8c1 (sub-challenge sc1a) is :
AUROC: 0.781937275711
Scoring functions available so far:
* Dream8 HPN (D8C1) sub challenges named sc1a, sc1b, sc2a, sc2b.
See `Synapse page <https://www.synapse.org/#!Synapse:syn1720047>`_ for details
* Dream8 Tox (D8C2) sub challenges named sc1, sc2.
See `Synapse page <https://www.synapse.org/#!Synapse:syn1761567>`_ for details
Installation
---------------
::
pip install dreamtools
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