Visualise exons and their reading frames
Project description
Exonviz
ExonViz is a simple tool to generate and draw transcripts that include coding and non-coding regions. All exons are to scale and the reading frames of the exons are visible. Single or multiple variants along the transcript can be drawn and will automatically be shown in the correct location.
Online version
You can try out ExonViz online at exonviz.rnatherapy.nl.
Installation
ExonViz only requires Python, and can be installed using PIP:
pip install exonviz
Usage
Simply supply either a transcript (with version!), or a valid HGVS description to exonviz to generate a figure:
exonviz --transcript "NM_003002.4:r.[274G>T;300del]" > SHDH.svg
Documentation
The documentation for ExonViz is available on Readthedocs, including some examples of what is possible using the command line version of ExonViz.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
