A set of standalone application and pipelines dedicated to NGS analysis
Project description
- How to cite:
Citations are important for us to carry on developments. For Sequana library (including the pipelines), please use
Cokelaer et al, (2017), ‘Sequana’: a Set of Snakemake NGS pipelines, Journal of Open Source Software, 2(16), 352, JOSS DOI doi:10.21105/joss.00352
For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer. Sequana coverage: detection and characterization of genomic variations using running median and mixture models. GigaScience, 7(12), 2018. https://doi.org/10.1093/gigascience/giy110 Also available on bioRxiv (DOI: http://biorxiv.org/content/early/2016/12/08/092478)
For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer. Sequanix: A Dynamic Graphical Interface for Snakemake Workflows Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034 Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)
Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.
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Taxonomy analysis |
Please see the documentation for an up-to-date status and documentation.
Contributors
Maintaining Sequana would not have been possible without users and contributors. Each contribution has been an encouragement to pursue this project. Thanks to all:
Changelog
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0.14.6 |
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0.14.0 |
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0.13.X |
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0.12.7 |
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0.12.6 |
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0.12.5 |
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0.12.4 |
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Project details
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