Genbank data visualization webapp
Project description
GBKviz: Genbank Data Visuzalization tool
Overview
GBKviz is browser-based Genbank data vizualization webapp.
User can easily and flexibly plot specified region genome CDS figure in any format.
In addition, GBKvis can perform comparative genome plot figure.
Demo GIF here...
Install
GBKviz is implemented with Python3 (Tested on Ubuntu20.04)
Install PyPI stable version with pip:
pip install gbkviz
Install latest development version with pip:
pip install git+git://github.com/moshi4/GBKviz.git
Dependencies
-
Streamlit
Web app framework for quick development -
BioPython
Utility tools for computational molecular biology -
MUMmer (Optional)
Genome alignment tool for comparative genomics (v3 or v4)
Command Usage
Launch GBKviz in web browser:
gbkviz_webapp
Usage
Project details
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Source Distribution
GBKviz-0.1.0.tar.gz
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Built Distribution
GBKviz-0.1.0-py3-none-any.whl
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