Genbank data visualization webapp

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License: MIT License (MIT)

Author: moshi

Tags gbkviz, bioinformatics, streamlit, genomics, visualization

Requires: Python >=3.8, <4.0

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Project description

GBKviz: Genbank Data Visualization WebApp

Python3 License Latest PyPI version
Open in Streamlit

Overview

GBKviz is browser-based Genbank data vizualization webapp.
User can easily and flexibly plot specified region genome CDS figure in any format.
In addition, GBKviz can perform comparative genome plot figure using MUMmer.

Demo GIF here...

Install

GBKviz is implemented with Python3 (Tested on Ubuntu20.04)

Install PyPI stable version with pip:

pip install gbkviz

Install latest development version with pip:

pip install git+git://github.com/moshi4/GBKviz.git

Dependencies

  • Streamlit
    Web framework for quick development

  • BioPython
    Utility tools for computational molecular biology

  • MUMmer
    Genome alignment tool for comparative genomics (v3 or v4)

Command Usage

Launch GBKviz in web browser:

gbkviz_webapp

Usage

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for moshi4 from gravatar.com moshi4

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: moshi

Tags gbkviz, bioinformatics, streamlit, genomics, visualization

Requires: Python >=3.8, <4.0

Classifiers

Release history Release notifications | RSS feed

1.2.0

1.1.5

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.0

0.2.1

0.2.0

This version

0.1.1

0.1.0

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Source Distribution

GBKviz-0.1.1.tar.gz (312.8 kB view hashes)

Uploaded Source

Built Distribution

GBKviz-0.1.1-py3-none-any.whl (306.5 kB view hashes)

Uploaded Python 3

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