Plugin to use SIDESPLITTER program within the Scipion framework
Project description
This plugin provide wrappers around SIDESPLITTER program for mitigating local overfitting.
prod: |
devel: |
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-sidesplitter
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-sidesplitter.git
install
scipion installp -p path_to_scipion-em-sidesplitter --devel
SIDESPLITTER sources will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is software/em/sidesplitter-1.0, if you want to change it, set SIDESPLITTER_HOME in scipion.conf file pointing to the folder where the SIDESPLITTER is installed.
To check the installation, simply run one of the following Scipion tests:
scipion test sidesplitter.tests.test_protocol_sidesplitter.TestSideSplitter
A complete list of tests can also be seen by executing scipion test --show --grep sidesplitter
Supported versions
1.0
Protocols
local filter
References
Kailash Ramlaul, Colin M. Palmer and Christopher H. S. Aylett (2020). Mitigating Local Over-fitting During Single Particle Reconstruction with SIDESPLITTER. https://www.biorxiv.org/content/10.1101/2019.12.12.874081v2
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Hashes for scipion-em-sidesplitter-1.0.2.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 95ea8da618bdf1aff032a87aac5cb999a1a7200335c1b620387b3366bce830b2 |
|
MD5 | c72b98bb797138b10bdca2f5ef5d16ec |
|
BLAKE2b-256 | d3dfed6570fc1eb82ce877850aaf8ca9bd52501a41ab4ddbea353a5d10367a7d |