Plugin to use SIDESPLITTER program within the Scipion framework
Project description
This plugin provides a wrapper for SIDESPLITTER program for mitigating local overfitting.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-sidesplitter
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-sidesplitter.git
install
scipion installp -p /path/to/scipion-em-sidesplitter --devel
SIDESPLITTER sources will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is software/em/sidesplitter-1.2, if you want to change it, set SIDESPLITTER_HOME in scipion.conf file pointing to the folder where the SIDESPLITTER is installed.
To check the installation, simply run one of the following Scipion tests:
scipion test sidesplitter.tests.test_protocol_sidesplitter.TestSideSplitter
A complete list of tests can also be seen by executing scipion test --show --grep sidesplitter
Supported versions
1.2
Protocols
local filter
References
Kailash Ramlaul, Colin M. Palmer and Christopher H. S. Aylett (2020). Mitigating Local Over-fitting During Single Particle Reconstruction with SIDESPLITTER. https://www.biorxiv.org/content/10.1101/2019.12.12.874081v2
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for scipion-em-sidesplitter-3.0.10.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 2b8db882ca01b04b9147c6c767cbc3a76ffe8ca980efa970a019f5a68f43dda1 |
|
MD5 | f7d691ac47b66b02723b1a7440f3bd2a |
|
BLAKE2b-256 | 585880a76654e405f929c086d5225c3c244acf6995900774ebb2d95e40234556 |
Hashes for scipion_em_sidesplitter-3.0.10-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 784900db10b32a98ad9bccd799af16160f596297254c16319a3d606451b79ca1 |
|
MD5 | 153f3380e2f4b01f9fc26371ddcc0196 |
|
BLAKE2b-256 | 19cee3f988e94bac9d82fc847945396785dae69ae1c25be534e42b5189a7bce3 |