Plugin to use SIDESPLITTER program within the Scipion framework
Project description
This plugin provide wrappers around SIDESPLITTER program for mitigating local overfitting.
prod: |
devel: |
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-sidesplitter
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-sidesplitter.git
install
scipion installp -p path_to_scipion-em-sidesplitter --devel
SIDESPLITTER sources will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is software/em/sidesplitter-1.2, if you want to change it, set SIDESPLITTER_HOME in scipion.conf file pointing to the folder where the SIDESPLITTER is installed.
To check the installation, simply run one of the following Scipion tests:
scipion test sidesplitter.tests.test_protocol_sidesplitter.TestSideSplitter
A complete list of tests can also be seen by executing scipion test --show --grep sidesplitter
Supported versions
1.2
Protocols
local filter
References
Kailash Ramlaul, Colin M. Palmer and Christopher H. S. Aylett (2020). Mitigating Local Over-fitting During Single Particle Reconstruction with SIDESPLITTER. https://www.biorxiv.org/content/10.1101/2019.12.12.874081v2
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Hashes for scipion-em-sidesplitter-3.0.4.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 3f63f055eaffbdd98fd1edefb913a3cc835a7032dd01f60bc85571e7401cfb09 |
|
MD5 | dea914cd1a8b1ad9da1f3afea160461e |
|
BLAKE2b-256 | 7c38553c41b86633b6b42fc157dd0ff361ae2ea2139bb44cb63d121ced836c75 |