Plugin to use SIDESPLITTER program within the Scipion framework
Project description
This plugin provide wrappers around SIDESPLITTER program for mitigating local overfitting.
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Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-sidesplitter
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-sidesplitter.git
install
scipion installp -p path_to_scipion-em-sidesplitter --devel
SIDESPLITTER sources will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is software/em/sidesplitter-1.2, if you want to change it, set SIDESPLITTER_HOME in scipion.conf file pointing to the folder where the SIDESPLITTER is installed.
To check the installation, simply run one of the following Scipion tests:
scipion test sidesplitter.tests.test_protocol_sidesplitter.TestSideSplitter
A complete list of tests can also be seen by executing scipion test --show --grep sidesplitter
Supported versions
1.2
Protocols
local filter
References
Kailash Ramlaul, Colin M. Palmer and Christopher H. S. Aylett (2020). Mitigating Local Over-fitting During Single Particle Reconstruction with SIDESPLITTER. https://www.biorxiv.org/content/10.1101/2019.12.12.874081v2
Project details
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